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For a 5Y3 the pins used are 2, 4, 6, and 8 (2 and 8 heaters) and 4 adn 6 for the plates.
http://tdsl.duncanamps.com/show.php?des=5Y3
I assume pins 5 and 7 are being used as "terminal strips" where the diodes to pins 4 and 6, respectively, are in series with the leads so if the tube fails the amp is okay, yes?
One question:
1) whats the cap for?
2) shouldn't something go to ground? (EDIT- I see the PT has a centertap)