Wicker, see if this helps at all.
First you want to adjust the bridge for string height off the fretboard.
These are the little Allen head screws on each saddle.
2mm-5mm from the bottom of the string to the 17 fret.
2mm-3mm or so on the treble strings.
Adjust the nut slots so that the strings are roughly .004-.005" above the first fret.
This can be tricky if you haven't done it before so a tech may be needed to adjust the nut.
In other words, if your frets are .045" tall, you would adjust the slot in the nut so the bottom of the slot is .048-.050"from the fretboard.
I use feeler gauges to set that depth and file down to the gauges, fool proof.
Adjust the truss rod so you have just a bit of relief in the neck.
Usually about .010-012" at the 8th fret. So .012" from the fret to the bottom of the string.
That is the curve you see in the neck.
Turn the truss rod nut clockwise to tighten the rod to straighten the neck and loosen it, counterclockwise to add relief or curve to the neck.
I should state that you don't ever want to turn the truss rod nut more than 1/4 turn, that is a big adjustment.
Usually try 1/8 turn and let it settle in for a day or two before deciding it needs more.
Then lastly, you intonate the strings by adjusting the long screw on the saddles    so that the note you play at the 12th fret is the same as the 12th fret harmonic.
That is the simple explanation.
With a three saddle bridge you have to comprimise a little if the saddles are not compensated.
I have a cheap Wilkinson bridge on my tele that has compensated saddles and they work great.
I think I only paid $30 for it.
[img:711:400]
http://www.axesrus.com/Hardware/Bridges ... eFront.jpg[/img]
http://www.axesrus.com/axecart.htm
Anyway, here is Fenders setup guide for the Telecaster.
Good luck!
http://www.fender.com/support/articles/ ... etup-guide