I guess it all goes back to keep it simple. Yesterday I finished up my Bluesmaster build (C'tone kit with Classictone iron). After reviewing everything and doing the lightbulb limiter checks, I fired it up and started taking voltage readings -- they were all incredibly high (6L6 plates reading around 700V and all others more than 100V too high). So, I went back and checked and rechecked everything and couldn't find anything wrong. After several hours of Googling, tracing wires, thinking and "troubleshooting", I noticed the "low battery indicator" on my meter. Once I replaced the battery, all of the voltages were spot on.
Oh well, I was happy to resolve the "problem", but a bit mad at myself for ignoring the obvious. By the time I figured everything out, it was too late to really crank it up, but it sounded good at bedroom levels and everything seems to be working well. I can't wait to get out of work tonight, tweak it a bit and hear it cracked.
All in all, I guess my time wasn't completely wasted. All of the troubleshooting really forced me learn and understand what's happening through the power supply side of the amp, which makes it even more fun.